Installation

Install from PyPI (Recommended)

The easiest way to install CHIMERA is using pip:

pip install chimera-brainparcellation

This will automatically install all required dependencies.

Manual Installation

Alternatively, you can install from source:

git clone https://github.com/connectomicslab/chimera
cd chimera
pip install -e .

Requirements

CHIMERA requires the following external tools:

• FreeSurfer (version > 7.2.0)

• FSL

• ANTs

Python Dependencies

All Python dependencies are automatically installed with pip:

• numpy

• pandas

• scipy

• nibabel

• pybids

• templateflow

• clabtoolkit

• rich